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make check panic: Segmentation fault -- stopping myself...
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make check panic: Segmentation fault -- stopping myself...
by zoran-7
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To: bug@...
Cc: zorani@... Subject: make check panic: Segmentation fault -- stopping myself... Bug report for Octave 3.0.1 configured for i686-pc-linux-gnu Description: ----------- After a seemingly OK compilation, export LIBS=-lmetis ./configure, make make check <--- fails at this point Output sample: scripts/general/trapz.m ................................ PASS 6/6 scripts/geometry/convhull.m ............................panic: Segmentation fault -- stopping myself... make[2]: *** [check] Segmentation fault make[2]: Leaving directory `/home/zoran/Desktop/octave-3.0.1/test' Repeat-By: --------- export LIBS=-lmetis 1) ./configure 2) make 3) make check Fix: --- * If possible, replace this item with a description of how to fix the problem (if you don't have a fix for the problem, don't include this section, but please do submit your report anyway). Configuration (please do not edit this section): ----------------------------------------------- uname output: Linux dyn184 2.6.22.17-0.1-default #1 SMP 2008/02/10 20:01:04 UTC i686 i686 i386 GNU/Linux configure opts: 'LIBS=-lmetis' Fortran compiler: gfortran FFLAGS: -O -mieee-fp F2C: @F2C@ F2CFLAGS: @F2CFLAGS@ FLIBS: -L/usr/lib/gcc/i586-suse-linux/4.2.1 -L/usr/lib/gcc/i586-suse-linux/4.2.1/../../../../i586-suse-linux/lib -L/usr/lib/gcc/i586-suse-linux/4.2.1/../../.. -lz -lgfortranbegin -lgfortran -lm -lmetis CPPFLAGS: INCFLAGS: -I. -I. -I./liboctave -I./src -I./libcruft/misc C compiler: gcc, version 4.2.1 (SUSE Linux) CFLAGS: -g -O2 CPICFLAG: -fPIC C++ compiler: g++, version 4.2.1 CXXFLAGS: -g -O2 CXXPICFLAG: -fPIC LD_CXX: g++ LDFLAGS: LIBFLAGS: -L. RLD_FLAG: -Wl,-rpath -Wl,/usr/local/lib/octave-3.0.1 BLAS_LIBS: -llapack -lblas FFTW_LIBS: -lfftw3 LIBS: -lreadline -lncurses -ldl -lz -lm -lmetis LEXLIB: LIBGLOB: SED: /usr/bin/sed DEFS: -DPACKAGE_NAME="" -DPACKAGE_TARNAME="" -DPACKAGE_VERSION="" -DPACKAGE_STRING="" -DPACKAGE_BUGREPORT="" -DOCTAVE_SOURCE=1 -D_GNU_SOURCE=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DSEPCHAR=':' -DSEPCHAR_STR=":" -D__NO_MATH_INLINES=1 -DCXX_NEW_FRIEND_TEMPLATE_DECL=1 -DCXX_ISO_COMPLIANT_LIBRARY=1 -DCXX_ABI=gnu_v3 -DHAVE_LIBM=1 -DHAVE_QHULL=1 -DHAVE_PCRE=1 -DHAVE_REGEXEC=1 -DHAVE_REGEX=1 -DHAVE_ZLIB_H=1 -DHAVE_ZLIB=1 -DHAVE_FFTW3=1 -DHAVE_GLPK_H=1 -DHAVE_GLPK=1 -DHAVE_CURL_CURL_H=1 -DHAVE_CURL=1 -DHAVE_IEEE754_DATA_FORMAT=1 -DF77_FUNC(name,NAME)=name ## _ -DF77_FUNC_(name,NAME)=name ## _ -DHAVE_BLAS=1 -DHAVE_SUITESPARSE_UMFPACK_H=1 -DHAVE_UMFPACK=1 -DUMFPACK_SEPARATE_SPLIT=1 -DHAVE_SUITESPARSE_COLAMD_H=1 -DHAVE_COLAMD=1 -DHAVE_SUITESPARSE_CCOLAMD_H=1 -DHAVE_CCOLAMD=1 -DHAVE_SUITESPARSE_CHOLMOD_H=1 -DHAVE_CHOLMOD=1 -DHAVE_SUITESPARSE_CS_H=1 -DHAVE_CXSPARSE=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPWNAM=1 -DHAVE_DEV_T=1 -DHAVE_INO_T=1 -DHAVE_NLINK_T=1 -DHAVE_NLINK_T=1 -DHAVE_LONG_LONG_INT=1 -DHAVE_UNSIGNED_LONG_LONG_INT=1 -DHAVE_SIGSET_T=1 -DHAVE_SIG_ATOMIC_T=1 -DSIZEOF_SHORT=2 -DSIZEOF_INT=4 -DSIZEOF_LONG=4 -DSIZEOF_LONG_LONG=8 -DHAVE_ALLOCA_H=1 -DHAVE_ALLOCA=1 -DNPOS=std::string::npos -DHAVE_PLACEMENT_DELETE=1 -DHAVE_DYNAMIC_AUTO_ARRAYS=1 -DSTDC_HEADERS=1 -DHAVE_DIRENT_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_WAIT_H=1 -DHAVE_ASSERT_H=1 -DHAVE_CURSES_H=1 -DHAVE_DLFCN_H=1 -DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_GRP_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 -DHAVE_LOCALE_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NCURSES_H=1 -DHAVE_POLL_H=1 -DHAVE_PWD_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_SYS_PARAM_H=1 -DHAVE_SYS_POLL_H=1 -DHAVE_SYS_RESOURCE_H=1 -DHAVE_SYS_SELECT_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TIME_H=1 -DHAVE_SYS_TIMES_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_UTSNAME_H=1 -DHAVE_TERMCAP_H=1 -DHAVE_UNISTD_H=1 -DHAVE_UTIME_H=1 -DHAVE_SSTREAM=1 -DHAVE_TERMIO_H=1 -DHAVE_SGTTY_H=1 -DHAVE_GLOB_H=1 -DHAVE_FNMATCH_H=1 -DHAVE_FNMATCH=1 -DHAVE_GLOB=1 -DHAVE_ATEXIT=1 -DHAVE_BASENAME=1 -DHAVE_BCOPY=1 -DHAVE_BZERO=1 -DHAVE_CANONICALIZE_FILE_NAME=1 -DHAVE_CHMOD=1 -DHAVE_DUP2=1 -DHAVE_ENDGRENT=1 -DHAVE_ENDPWENT=1 -DHAVE_EXECVP=1 -DHAVE_FCNTL=1 -DHAVE_FORK=1 -DHAVE_GETCWD=1 -DHAVE_GETEGID=1 -DHAVE_GETEUID=1 -DHAVE_GETGID=1 -DHAVE_GETGRENT=1 -DHAVE_GETGRGID=1 -DHAVE_GETGRNAM=1 -DHAVE_GETPGRP=1 -DHAVE_GETPID=1 -DHAVE_GETPPID=1 -DHAVE_GETPWENT=1 -DHAVE_GETPWUID=1 -DHAVE_GETTIMEOFDAY=1 -DHAVE_GETUID=1 -DHAVE_GETWD=1 -DHAVE_KILL=1 -DHAVE_LGAMMA=1 -DHAVE_LINK=1 -DHAVE_LOCALTIME_R=1 -DHAVE_LSTAT=1 -DHAVE_MEMMOVE=1 -DHAVE_MKDIR=1 -DHAVE_MKFIFO=1 -DHAVE_MKSTEMP=1 -DHAVE_ON_EXIT=1 -DHAVE_PIPE=1 -DHAVE_POLL=1 -DHAVE_PUTENV=1 -DHAVE_RAISE=1 -DHAVE_READLINK=1 -DHAVE_REALPATH=1 -DHAVE_RENAME=1 -DHAVE_RINDEX=1 -DHAVE_RMDIR=1 -DHAVE_ROUND=1 -DHAVE_SELECT=1 -DHAVE_SETGRENT=1 -DHAVE_SETLOCALE=1 -DHAVE_SETPWENT=1 -DHAVE_SETVBUF=1 -DHAVE_SIGACTION=1 -DHAVE_SIGLONGJMP=1 -DHAVE_SIGPENDING=1 -DHAVE_SIGPROCMASK=1 -DHAVE_SIGSUSPEND=1 -DHAVE_SNPRINTF=1 -DHAVE_STAT=1 -DHAVE_STRCASECMP=1 -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRNCASECMP=1 -DHAVE_STRPTIME=1 -DHAVE_STRSIGNAL=1 -DHAVE_SYMLINK=1 -DHAVE_TEMPNAM=1 -DHAVE_TGAMMA=1 -DHAVE_UMASK=1 -DHAVE_UNAME=1 -DHAVE_UNLINK=1 -DHAVE_USLEEP=1 -DHAVE_UTIME=1 -DHAVE_VFPRINTF=1 -DHAVE_VSPRINTF=1 -DHAVE_VSNPRINTF=1 -DHAVE_WAITPID=1 -DHAVE_STRFTIME=1 -DHAVE_LIBDL=1 -DHAVE_DLOPEN=1 -DHAVE_DLSYM=1 -DHAVE_DLERROR=1 -DHAVE_DLCLOSE=1 -DHAVE_DLOPEN_API=1 -DENABLE_DYNAMIC_LINKING=1 -DHAVE_TIMEVAL=1 -DHAVE_FINITE=1 -DHAVE_ISNAN=1 -DHAVE_ISINF=1 -DHAVE_COPYSIGN=1 -DHAVE_DECL_SIGNBIT=1 -DHAVE_ACOSH=1 -DHAVE_ASINH=1 -DHAVE_ATANH=1 -DHAVE_ERF=1 -DHAVE_ERFC=1 -DHAVE_EXP2=1 -DHAVE_LOG2=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 -DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_RDEV=1 -DHAVE_STRUCT_TM_TM_ZONE=1 -DHAVE_TM_ZONE=1 -DUSE_READLINE=1 -DEXCEPTION_IN_MATH=1 -DRETSIGTYPE=void -DHAVE_DECL_SYS_SIGLIST=1 -DHAVE_POSIX_SIGNALS=1 -DRETSIGTYPE_IS_VOID=1 -DHAVE_GETRUSAGE=1 -DHAVE_TIMES=1 -DYYTEXT_POINTER=1 -DGNUPLOT_BINARY="gnuplot" User-preferences (please do not edit this section): -------------------------------------------------- EDITOR = emacs EXEC_PATH = /usr/local/libexec/octave/3.0.1/site/exec/i686-pc-linux-gnu:/usr/local/libexec/octave/api-v32/site/exec/i686-pc-linux-gnu:/usr/local/libexec/octave/site/exec/i686-pc-linux-gnu:/usr/local/libexec/octave/3.0.1/exec/i686-pc-linux-gnu:/usr/local/bin:/opt/kde3/bin:/home/zoran/bin:/usr/local/bin:/usr/bin:/bin:/usr/bin/X11:/usr/X11R6/bin:/usr/games:/usr/lib/jvm/jre/bin:/usr/lib/mit/bin:/usr/lib/mit/sbin:/usr/NX/bin:/opt/COMSON/COMSON/bin:/opt/COMSON/EXTERNAL/SuiteSparse/*: IMAGE_PATH = .:/usr/local/share/octave/3.0.1/imagelib PAGER = less PS1 = CoMSON DP >> PS2 = ... PS4 = + beep_on_error = 0 completion_append_char = crash_dumps_octave_core = 1 echo_executing_commands = 0 fixed_point_format = 0 gnuplot_binary = gnuplot gnuplot_command_end = gnuplot_command_plot = pl gnuplot_command_replot = rep gnuplot_command_splot = sp gnuplot_command_title = t gnuplot_command_using = u gnuplot_command_with = w history_file = /home/zoran/.octave_hist history_size = 1024 ignore_function_time_stamp = system info_file = /usr/local/share/info/octave.info info_program = info makeinfo_program = makeinfo max_recursion_depth = 256 output_max_field_width = 5 output_precision = 5 page_output_immediately = 0 page_screen_output = 0 print_answer_id_name = 1 print_empty_dimensions = 1 save_precision = 16 saving_history = 1 sighup_dumps_octave_core = 1 sigterm_dumps_octave_core = 1 silent_functions = 0 split_long_rows = 1 string_fill_char = struct_levels_to_print = 0 suppress_verbose_help_message = 0 _______________________________________________ Bug-octave mailing list Bug-octave@... https://www.cae.wisc.edu/mailman/listinfo/bug-octave |
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Re: make check panic: Segmentation fault -- stopping myself...
by kahacjde
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zoran schrieb:
> To: bug@... > Cc: zorani@... > Subject: make check panic: Segmentation fault -- stopping myself... > > Bug report for Octave 3.0.1 configured for i686-pc-linux-gnu > > Description: > ----------- > > After a seemingly OK compilation, > > export LIBS=-lmetis > ./configure, > make > make check <--- fails at this point > > Output sample: > > > > scripts/general/trapz.m ................................ PASS 6/6 > scripts/geometry/convhull.m ............................panic: Segmentation fault -- stopping myself... > make[2]: *** [check] Segmentation fault > make[2]: Leaving directory `/home/zoran/Desktop/octave-3.0.1/test' > > > run the qhull tests? Try: cd /path_to_qhull/qhull-2003.1/eg sh ./q_test If that fails too, you have to recompile qhull with -O0. AFAIK there is a gcc bug (gcc-4.2.1) which makes qhull fail [1]. Hope that helps, Kai [1] http://www.nabble.com/qhull-segfault-if-compiled-with--O2-td12523684.html#a12523684 _______________________________________________ Bug-octave mailing list Bug-octave@... https://www.cae.wisc.edu/mailman/listinfo/bug-octave |
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Re: make check panic: Segmentation fault -- stopping myself...
by zoran@comson
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